A more flexible version of Guidescan2 is offered as a command line interface
at: github.com/schmidt73/guidescan-cli.
Common use cases and complete documentation is well-described in the attached manual.
For ease of use we make available a set of pre-constructed indices for several genomes
that
can be used with the command line version of our software for a variety of tasks. In
addition,
we provide the raw Guidescan2 databases produced by our tool for several organism-enzyme
combinations in a compressed BAM format. The exact details of the format are described
in the software
manual.
The indices can be browsed at /indices and /databases.
We also put them
in the following tables for your convenience.
Guidescan2 Indices
| # |
Organism |
Shorthand |
RefSeq Accession |
Download |
| 1 |
Fruit Fly |
dm6 |
GCF_000001215.4 |
dm6 |
| 2 |
Human |
hg38 |
GCF_000001405.39 |
hg38 |
| 3 |
House Mouse |
mm10 |
GCF_000001635.26 |
mm10 |
| 4 |
House Mouse |
mm39 |
GCF_000001635.27 |
mm39 |
| 5 |
Baker's Yeast |
sacCer3 |
GCF_000146045.2 |
sacCer3 |
| 6 |
Norway Rat |
rn6 |
GCF_015227675.2 |
rn6 |
| 7 |
Nematode |
ce11 |
GCF_000002985.6 |
ce11 |
Guidescan2 Databases
| # |
Organism |
Shorthand |
Enzyme |
RefSeq Accession |
Download |
| 1 |
Fruit Fly |
dm6 |
cas9 |
GCF_000001215.4 |
dm6 |
| 2 |
Human |
hg38 |
cpf1 |
GCF_000001405.39 |
hg38 |
| 3 |
Human |
hg38 |
cas9 |
GCF_000001405.39 |
hg38 |
| 4 |
House Mouse |
mm10 |
cpf1 |
GCF_000001635.26 |
mm10 |
| 5 |
House Mouse |
mm10 |
cas9 |
GCF_000001635.26 |
mm10 |
| 6 |
House Mouse |
mm39 |
cas9 |
GCF_000001635.27 |
mm39 |
| 7 |
Baker's Yeast |
sacCer3 |
cas9 |
GCF_000146045.2 |
sacCer3 |
| 8 |
Norway Rat |
rn6 |
cas9 |
GCF_015227675.2 |
rn6 |
| 9 |
Nematode |
ce11 |
cpf1 |
GCF_000002985.6 |
ce11 |
| 10 |
Nematode |
ce11 |
cas9 |
GCF_000002985.6 |
ce11 |
